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Just a heads up from someone who's been running an S Corp for 7 years - the single most important thing is documentation. If you're using your personal phone and home internet for business, create a simple log of business vs. personal usage. For my phone, I just take my monthly bill and multiply by the percentage of business calls/texts (I track for a typical week each quarter). For the home office, measure carefully and take photos. Document exclusive business use. These simple steps have saved me during an IRS review.
Do you recommend any specific apps or methods for tracking the business vs personal usage? I tried just keeping notes but I'm terrible at staying consistent with it.
I actually keep it super simple. For my phone, I use the call log that's already on my phone and just highlight business calls once a week (takes 5 minutes). Then quarterly, I calculate the percentage. No special app needed. For internet and other utilities, I use the square footage method since it's much simpler and well-accepted by the IRS. Just calculate what percentage of your home is exclusively used for business, and apply that percentage to your utilities. Take photos of your office space and keep documentation of the square footage calculations. The key is consistency - whatever method you choose, stick with it and document your calculations.
One thing nobody's mentioned yet - consider using QuickBooks Online specifically for S Corps. It has built-in features for handling owner's draws vs. salary and can generate shareholder basis reports. Makes tax time way easier and helps track everything properly throughout the year.
Something similar happened to me in 2022 - I couldn't find a 1099-MISC from a small client but had reported all the income. I just wrote a little note explaining the situation and attached it to my return. Never heard anything about it, so I assume it was fine! But one thing to consider - the companies that issue 1099s are required to send them to you by January 31, and they also send copies to the IRS. So the IRS already has a copy of your 1099 in their system, even if you don't have yours. They mainly want to make sure the numbers match up.
Does the IRS actually check every single form against what they have on file? I thought they just randomly audit a small percentage of returns?
The IRS uses automated matching programs that compare what's reported on your tax return with the information they receive from employers, banks, and other institutions. It's not a manual process checking every form, but their systems will flag discrepancies. This automated matching happens for most returns, not just those selected for audit. So if the income on your missing 1099 doesn't match what you reported, you might receive a notice from the IRS later. That's why it's important to report the income accurately even if you don't have the form.
Ughhh I'm in the exact same boat! My tax software kept giving me errors when I tried to e-file so now I have to mail everything. Has anyone tried calling the company that issued the 1099 directly? My situation is with a 1099-NEC from a company I did freelance work for last summer but I think I threw out the form accidentally when moving in December...
Yes! Definitely call the company directly. Most businesses can easily generate a new copy of your 1099. I had this issue with a 1099-INT from my bank and they emailed me a PDF version within an hour of calling. Some companies even have portals where you can download your tax documents yourself.
Don't overlook retirement contributions! With your promotion, you might be in a higher tax bracket now. Maximizing your 401k will lower your taxable income. If you qualify for a Roth IRA, that's also worth considering for tax-free growth. And since you have freelance income, you could potentially open a SEP IRA or Solo 401k to shelter even more money from taxes.
Thanks for bringing this up! Do you know what the income limits are for Roth IRA contributions? Also, for the SEP IRA, can I contribute to that even if I have a 401k through my main employer?
For 2025, you can fully contribute to a Roth IRA if your modified adjusted gross income is less than $146,000 (single) or $230,000 (married filing jointly). The contribution limit phases out above those amounts until it reaches zero. Yes, you absolutely can contribute to a SEP IRA even if you have a 401k through your employer. The SEP IRA contribution is based only on your self-employment income. The limit is 25% of your net self-employment earnings, up to $69,000 for 2025. It's a great way to reduce taxes on your freelance income while saving for retirement.
Has anyone used a HSA as part of their tax strategy? I've heard it's like a "triple tax advantage" but I'm not sure if I qualify or how much it would help.
HSAs are awesome! Triple tax advantage is right - money goes in tax-free, grows tax-free, and comes out tax-free for medical expenses. For 2025, you can contribute up to $4,150 for individual coverage or $8,300 for family coverage. But you need a qualifying high-deductible health plan to be eligible. Check if your plan is HSA-eligible - the deductible needs to be at least $1,500 for individuals or $3,000 for families.
Has anyone considered that this might be due to the bank itself? Sometimes banks hold a portion of large government deposits for 1-2 business days as a fraud prevention measure. This happened to me last year where my pending deposit showed about $700 less than my actual refund amount, but the full amount posted after it cleared. Might be worth calling your bank to check their policy on large government deposits.
I hadn't thought of that! I'll call our bank today to check. That would be such a relief if it's just their standard procedure. Did your bank give you any trouble when you called about it?
No trouble at all when I called. The customer service rep explained it was standard procedure for deposits over a certain amount. They actually have an automated system that flags larger deposits for a brief review period. In my case, they said it was because the deposit was significantly larger than my usual direct deposits. The rep confirmed that the full amount would be available within 48 hours, and it was. Just be sure to speak with someone in their deposit operations department rather than a general customer service rep, as they'll have more specific information about how deposits are processed.
Double check if you had any tax prep fees taken out of your refund. I used TurboTax this year and opted to have the $89 fee taken from my refund rather than paying upfront. The transcript showed the full amount but my bank deposit was $89 less. Plus they charged an additional $40 "processing fee" for this service which I somehow missed in the fine print. So it was actually $129 less than my transcript showed.
This! The processing fees for refund transfers are ridiculous. I got hit with this last year - H&R Block charged me $35 for the basic prep fee plus a $40 "refund transfer fee" for the privilege of having the fee taken from my refund. It's basically a very expensive short-term loan when you think about it.
Dyllan Nantx
I had this exact same problem last year!! The payment plan doesn't show in TurboTax but it DOES exist with the IRS. I panicked and ended up setting up a second payment plan directly with the IRS and then had two plans running simultaneously. What a nightmare to fix!! Don't make my mistake. Check with the IRS directly before creating any new payment plans. And definitely keep any confirmation emails or numbers you received when originally setting it up through TurboTax. Those are your proof that you did everything right on time.
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Axel Bourke
ā¢Omg that sounds awful! Did you have to pay any penalties for having two plans? How did you even figure out you had duplicate plans?
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Dyllan Nantx
ā¢I only realized I had two plans when I saw double payments coming out of my account! I called the IRS (waited forever) and they explained what happened. Fortunately, they waived penalties since it was clearly a misunderstanding, but they counted the extra payment toward my principal. The most frustrating part was that it took almost 3 months to get everything straightened out. The IRS had to manually cancel one of the plans and recalculate everything. Definitely check first before creating a new plan!
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TillyCombatwarrior
Has anybody tried setting up payment plans through other tax software? I've been using HR Block and wondering if they handle payment plans better than TurboTax seems to.
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Anna Xian
ā¢I've used both TurboTax and H&R Block over the years. In my experience, H&R Block actually shows the payment plan details in your account after filing, which TurboTax doesn't seem to do. The downside is that H&R Block's interface is clunkier overall. But for payment plan visibility, they're definitely better.
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